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Code Issues Releases Wiki Activity

Overhaul of data saving

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This commit is contained in:
Alexander Minges 2015-07-08 17:48:27 +02:00
parent 6a2c7f2762
commit 71c25f902b
6 changed files with 327 additions and 215 deletions
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92
pydsf.py
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@ -478,80 +478,44 @@ class Plate:
self.max_tm = max(self.tms)
self.min_tm = min(self.tms)
def write_tm_table(self, filename):
def write_tm_table(self, filename, avg=False):
with open(filename, 'w') as f:
f.write('#{:<4s}{:>13s}\n'.format('ID', '"Tm [°C]"'))
writer = csv.writer(f, dialect='excel')
header = ['ID', 'Tm [°C]']
if avg:
header.append('SD [°C]')
writer.writerow(header)
for well in self.wells:
if np.isnan(well.tm) or well in self.denatured_wells:
f.write('{:<5s}{:>12s}\n'.format(well.name, 'NaN'))
else:
f.write('{:<5s}{:>12s}\n'.format(well.name, str(well.tm)))
row = [well.name, well.tm]
if avg:
row.append(well.tm_sd)
writer.writerow(row)
def write_avg_tm_table(self, filename):
def write_data_table(self, filename, dataType='raw'):
with open(filename, 'w') as f:
f.write('#{:<4s}{:>13s}{:>13s}\n'.format('"ID"', '"Tm [°C]"',
'"SD"'))
writer = csv.writer(f, dialect='excel')
header = ['Tm [°C]']
for well in self.wells:
if np.isnan(well.tm) or well in self.denatured_wells:
f.write('{:<5s}{:>12s}{:>12s}\n'.format(well.name, 'NaN',
'NaN'))
else:
f.write('{:<5s}{:>12s}{:>12s}\n'.format(well.name,
str(well.tm),
str(well.tm_sd)))
def write_raw_table(self, filename):
with open(filename, 'w') as f:
f.write('#"Raw data"\n')
f.write('#{:<10s}'.format('"T [°C]"'))
for well in self.wells:
f.write('{:>15s}'.format(well.name))
f.write('\n')
header.append(well.name)
writer.writerow(header)
i = 0
row = []
for t in self.temprange:
f.write('{:<10s}'.format(str(t)))
row.append(str(t))
for well in self.wells:
d = well.raw[i]
if dataType == 'raw':
d = well.raw[i]
elif dataType == 'filtered':
d = well.filtered[i]
elif dataType == 'derivative':
d = well.derivatives[1][i]
else:
raise ValueError('Valid dataTypes are "raw", "filtered", and "derivative"! dataType provided was:{}'.format(dataType))
d_rounded = float(np.round(d, decimals=3))
f.write('{:>-15.3f}'.format(d_rounded))
f.write('\n')
i += 1
def write_filtered_table(self, filename):
with open(filename, 'w') as f:
f.write('#"Filtered data" \n')
f.write('#{:<10s}'.format('"T [°C]"'))
for well in self.wells:
f.write('{:>15s}'.format(well.name))
f.write('\n')
i = 0
for t in self.temprange:
f.write('{:<10s}'.format(str(t)))
for well in self.wells:
d = well.filtered[i]
d_rounded = float(np.round(d, decimals=3))
f.write('{:>-15.3f}'.format(d_rounded))
f.write('\n')
i += 1
def write_derivative_table(self, filename):
with open(filename, 'w') as f:
f.write('#"Derivative dI/dT"\n')
f.write('#{:<10s}'.format('"T [°C]"'))
for well in self.wells:
f.write('{:>15s}'.format(well.name))
f.write('\n')
i = 0
for t in self.temprange:
f.write('{:<10s}'.format(str(t)))
for well in self.wells:
d = well.derivatives[1][i]
d_rounded = float(np.round(d, decimals=3))
f.write('{:>-15.3f}'.format(d_rounded))
f.write('\n')
row.append(d_rounded)
writer.writerow(row)
row = []
i += 1
# TODO: Implement 'write_baseline_corrected_table()