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Code Issues Releases Wiki Activity

Start reimplementing plotting code

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Alexander Minges 2015-02-10 03:19:40 +01:00
parent 9d1e3d8fa2
commit fef87a6657
5 changed files with 152 additions and 54 deletions
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pydsf.py
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@ -1,14 +1,18 @@
#! /usr/bin/env python2
# -*- coding: utf-8 -*-
import csv
import random
try:
import matplotlib as mpl
#import mpl_toolkits.axes_grid
import mpl_toolkits.axes_grid1
mpl.use('Qt5Agg')
mpl.interactive(True)
import matplotlib.ticker as ticker
import matplotlib.pyplot as plt
import matplotlib.patches as mpatches
import matplotlib.gridspec as gridspec
except ImportError:
raise ImportError('----- Matplotlib must be installed. -----')
@ -436,9 +440,6 @@ def update_progress_bar(bar, value):
class PlotResults():
def __init__(self, experiment):
self.experiment = experiment
def plot_tm_heatmap_single(self, plate, widget):
"""
Plot Tm heatmap (Fig. 1)
@ -550,35 +551,86 @@ class PlotResults():
"""
canvas = widget.canvas
canvas.clear()
fig3 = canvas.fig # new figure
fig3.suptitle('Raw Data (plate #{})'.format(str(plate.id))) # set title
for plot_num in range(1, plate.wellnum + 1): # iterate over all wells
well = plate.wells[plot_num - 1] # get single well based on current plot number
ax = fig3.add_subplot(plate.rows, plate.cols, plot_num) # add new subplot
ax.autoscale(tight=True) # scale to data
ax.set_title(well.name, size='xx-small') # set title of current subplot to well identifier
im = np.arange(100)
im.shape = 10, 10
if well in plate.denatured_wells:
ax.patch.set_facecolor('#FFD6D6')
if plot_num == plate.wellnum - plate.cols + 1: # add axis label to the subplot in the bottom left corner of the figure
ax.set_xlabel(u'T [°C]', size='xx-small')
ax.set_ylabel('I', size='xx-small')
fig = canvas.fig
fig.suptitle('Raw Data (plate #{})'.format(str(plate.id)))
grid = mpl_toolkits.axes_grid1.Grid(fig, 111, nrows_ncols=(plate.rows, plate.cols), axes_pad=(0.1, 0.25), add_all=True, share_x=True, share_y=True, share_all=True)
for i in range(plate.wellnum):
well = plate.wells[i]
x = plate.temprange # set values for the x axis to the given temperature range
y = well.raw # grab y values from the raw data of the well
ax = grid[i]
#ax = fig.add_subplot(plate.rows, plate.cols, i+1)
ax.set_title(well.name, size=6) # set title of current subplot to well identifier
if well in plate.denatured_wells:
ax.patch.set_facecolor('#FFD6D6')
ax.xaxis.set_major_locator(ticker.MaxNLocator(4)) # only show three tickmarks on both axes
ax.yaxis.set_major_locator(ticker.MaxNLocator(4))
ax.axvspan(plate.t1, plate.tm_cutoff_low, facecolor='0.8', alpha=0.5) # shade lower cutoff area
ax.axvspan(plate.tm_cutoff_high, plate.t2, facecolor='0.8', alpha=0.5) # shade higher cutoff area
for label in ax.get_xticklabels() + ax.get_yticklabels(): # set fontsize for all tick labels to xx-small
label.set_fontsize('xx-small')
cax = ax.plot(x, y) # plot data to the current subplot
label.set_fontsize(6)
ax.plot(x, y)
fig.tight_layout()
canvas.draw()
#ax = grid[i]
#ax.axhline(color='r')
#ax.autoscale(enable=True, axis='y', tight=True)
#ax.set_title(well.name, size='xx-small')
#ax.plot(x, 1000*np.random.random(76))
#ax.set_yscale('log')
#for plot_num in range(1, plate.wellnum + 1):
# well = plate.wells[plot_num - 1]
# #ax = fig.add_subplot(plate.rows, plate.cols, plot_num)
# ax.autoscale(tight=True)
# ax.plot(plate.temprange, well.raw)
# ax.set_title(well.name, size='xx-small')
# if well in plate.denatured_wells:
# ax.patch.set_facecolor('#FFD6D6')
#for plot_num in range(1, plate.wellnum + 1):
# ax = fig.add_subplot(plate.rows, plate.cols, plot_num)
# ax.autoscale(tight=True)
# fig3 = canvas.fig # new figure
# fig3.suptitle('Raw Data (plate #{})'.format(str(plate.id))) # set title
#
# for plot_num in range(1, plate.wellnum + 1): # iterate over all wells
# well = plate.wells[plot_num - 1] # get single well based on current plot number
# ax = fig3.add_subplot(plate.rows, plate.cols, plot_num) # add new subplot
# ax = fig3.add_axes(plate.rows, plate.cols, plot_num)
# ax.autoscale(tight=True) # scale to data
# ax.set_title(well.name, size='xx-small') # set title of current subplot to well identifier
#
# if well in plate.denatured_wells:
# ax.patch.set_facecolor('#FFD6D6')
#
# if plot_num == plate.wellnum - plate.cols + 1: # add axis label to the subplot in the bottom left corner of the figure
# ax.set_xlabel(u'T [°C]', size='xx-small')
# ax.set_ylabel('I', size='xx-small')
#
# x = plate.temprange # set values for the x axis to the given temperature range
# y = well.raw # grab y values from the raw data of the well
#
# ax.xaxis.set_major_locator(ticker.MaxNLocator(4)) # only show three tickmarks on both axes
# ax.yaxis.set_major_locator(ticker.MaxNLocator(4))
# ax.axvspan(plate.t1, plate.tm_cutoff_low, facecolor='0.8', alpha=0.5) # shade lower cutoff area
# ax.axvspan(plate.tm_cutoff_high, plate.t2, facecolor='0.8', alpha=0.5) # shade higher cutoff area
# for label in ax.get_xticklabels() + ax.get_yticklabels(): # set fontsize for all tick labels to xx-small
# label.set_fontsize('xx-small')
#
# cax = ax.plot(x, y) # plot data to the current subplot
# def _plot_wrapper(self, plot, plate):
#