Athemis/pyKinetics
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This commit is contained in:
Alexander Minges 2015-08-25 00:20:07 +02:00
parent c95b0ecf40
commit 93751a2b3d
1 changed files with 19 additions and 1 deletions
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20
libkinetics/__init__.py
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@ -9,7 +9,7 @@ import warnings
class Replicate():
"""
Represents a single replicate within a measurement
"""
def __init__(self, num, xy, owner):
@ -66,6 +66,9 @@ class Replicate():
class Measurement():
"""
Represents a single measurement within an experiment.
"""
def __init__(self, xy, conc, conc_unit, owner):
self.logger = owner.logger
@ -109,6 +112,21 @@ class Measurement():
class Experiment():
"""
Represents the actual experiment.
Consists of several Measurement objects.
Args:
data_files: list containing csv-formatted data files
xlim: tuple of float values defining the lower and upper bound for
linear fitting of v0
do_hill: boolean to define whether to fit Hill-type kinetics in
addition to Michaelis-Menten kinetics. Defaults to False
fit_to_replicates: boolean to define wheter to fit to individual
replicates instead of the avarage slope. Defaults to False
logger: logging.Logger instance. If not given, a new logger is created
"""
def __init__(self, data_files, xlim, do_hill=False,
fit_to_replicates=False, logger=None):