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Material und Methoden vervollständigt; Beginn Ergebnisteil

This commit is contained in:
Alexander Minges 2012-08-01 18:48:23 +02:00
parent 9119d1667b
commit 8871a9ffe7
19 changed files with 45743 additions and 2011 deletions

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misc/ma_as_aln.fa Normal file
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>F. trinervia
TAKKRVFTFGKGRSEGNRDMKSLLGGKGANLAEMSSIGLSVPPGLTISTE
ACEEYQQNGKSLPPGLWDEISEGLDYVQKEMSASLGDPSKPLLLSVRSGA
AISMPGMMDTVLNLGLNDEVVAGLAGKSG-ARFAYDSYRRFLDMFGNVVM
GIPHSLFDEKLEQMKAEKGIHLDTDLTAADLKDLVEKYKNVYVEA-KGEK
FPTDPKKQLELAVNAVFDSWDSPRANKYRSINQITGLKGTAVNIQSMVFG
NMGNTSGTGVLFTRNPSTGEKKLYGEFLINAQGEDVVAGIRTPEDLGTME
TCMPEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRTGKRTGKG
AVRIAVDMVNEGLIDTRTAIKRVETQHLDQLLHPQFEDPSAYK-SHVVAT
GLPASPGAAVGQVCFSAEDAETWHAQGKSAILVRTETSPEDVGGMHAAAG
ILTARGGMTSHAAVVARGWGKCCVSGCADIRVNDDMKIFTIGDRVIKEGD
WLSLNGTTGEVILGKQLLAPPAMSNDLEIFMSWADQARRLKVMANADTPN
DALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKVALDL
LLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEHIVNELAVDT
GMSADEIYSKIENLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSM
TN-QGVTVIPEIMVPLVGTPQELRHQISVIRGVAANVFAEMGVTLEYKVG
TMIEIPRAALIAEEIGKEADFFSFGTNDLTQMTFGYSRDDVGKFLQIYLA
QGILQHDPFEVIDQKGVGQLIKMATEKGRAANPSLKVGICGEHGGEPSSV
AFFDGVGLDYVSCSPFRVPIARLAAAQVI---V
>F. brownii
TTKKRVFTFGKGNSEGNKDMKSLLGGKGANLAEMASIGLSVPPGLTISTE
ACEEYQQNGKKLPPGLWDEILEGLQYVQKEMSASLGDPSKALLLSVRSGA
AISMPGMMDTVLNLGLNDEVVDGLAAKSG-ARFAYDSYRRFLDMFGNVVM
GIPHSLFDEKLEQMKAEKGIHLDTDLTAADLKDLAEQYKNVYVEA-KGEK
FPTDPKKQLELAVNAVFDSWDSPRANKYRSINQITGLKGTAVNIQCMVFG
NMGNTSGTGVLFTRNPSTGEKKLYGEFLVNAQGEDVVAGIRTPEDLVTME
TCMPEAYRELVENCVILERHYKDMMDIEFTVQENRLWMLQCRTGKRTGKG
AVRIAVDMVNEGLIDTRTAIKRVETQHLDQLLHPQFENPSAYK-SHVVAT
GLPASPGAAVGQVVFSAEDAETWHAQGKSAILVRTETSPEDVGGMHAAAG
ILTARGGMTSHAAVVARGWGKCCVSGCADIRVNDDMKVFTIGDRVIKEGD
WLSLNGSTGEVILGKQLLAPPAMSNDLETFMSWADQARRLKVMANADTPN
DALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDL
LLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEHIVNELTADT
GMSKDEIYSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSM
NN-QGVTVIPEIMVPLVGTPQELRHQIGVIRGVAANVFAEMGLTLEYKVG
TMIEIPRAALIADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYLS
QGILQHDPFEVLDQKGVGQLIKMATEKGRAANPNLKVGICGEHGGEPSSV
AFFDGVGLDYVSCSPFRVPIARLAAAQVV---V
>Zea mays
TTKKRVFHFGKGKSEGNKTMKELLGGKGANLAEMASIGLSVPPGFTVSTE
ACQQYQDAGCALPAGLWAEIVDGLQWVEEYMGATLGDPQRPLLLSVRSGA
AVSMPGMMDTVLNLGLNDEVAAGLAAKSG-ERFAYDSFRRFLDMFGNVVM
DIPRSLFEEKLEHMKESKGLKNDTDLTASDLKELVGQYKEVYLSA-KGEP
FPSDPKKQLELAVLAVFNSWESPRAKKYRSINQITGLRGTAVNVQCMVFG
NMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVVAGIRTPEDLDAMK
NLMPQAYDELVENCNILESHYKEMQDIEFTVQENRLWMLQCRTGKRTGKS
AVKIAVDMVNEGLVEPRSAIKMVEPGHLDQLLHPQFENPSAYK-DQVIAT
GLPASPGAAVGQVVFTAEDAEAWHSQGKAAILVRAETSPEDVGGMHAAVG
ILTERGGMTSHAAVVARWWGKCCVSGCSGIRVNDAEKLVTIGSHVLREGE
WLSLNGSTGEVILGKQPLSPPALSGDLGTFMAWVDDVRKLKVLANADTPD
DALTARNNGAQGIGLCRTEHMFFASDERIKAVRQMIMAPTLELRQQALDR
LLTYQRSDFEGIFRAMDGLPVTIRLLDHPSYEFLPEGNIEDIVSELCAET
GANQEDALARIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFEAAIAM
TN-QGVQVFPEIMVPLVGTPQELGHQVTLIRQVAEKVFANVGKTIGYKVG
TMIEIPRAALVADEIAEQAEFFSFGTNDLTQMTFGYSRDDVGKFIPVHLA
QGILQHDPFEVLDQRGVGELVKFATERGRKARPNLKVGICGEHGGEPSSV
AFFAKAGLDFVSCSPFRVPIARLAAAQVL---V
>C. symbiosum
MA-KWVYKF----EEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTE
ACTEYYNSGKQITQEIQDQIFEAITWLEELNGKKFGDTEDPLLVSVRSGA
RASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVM
EVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEE
FPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQTMVFG
NKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLE
NDMPDCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRNGKRTAPA
ALQIACDLVDEGMITEEEAVVRIEAKSLDQLLHPTF-NPAALKAGEVIGS
ALPASPGAAAGKVYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEG
ILTVRGGMTSHAAVVARGMGTCCVSGCGEIKINEEAKTFELGGHTFAEGD
YISLDGSTGKIYKGDIETQEASVSGSFERIMVWADKFRTLKVRTNADTPE
DTLNAVKLGAEGIGLCRTEHMFFEAD-RIMKIRKMILSDSVEAREEALNE
LIPFQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEE--QAELAKNM
GLTLAEVKAKVDELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEV
KEETGIDIVPEIMIPLVGEKKELKFVKDVVVEVAEQVKKEKGSDMQYHIG
TMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYK
AKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSV
EFCHKVGLNYVSCSPFRVPIARLAAAQAALNNK