194 lines
11 KiB
Text
194 lines
11 KiB
Text
CLUSTAL 2.1 multiple sequence alignment
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pETEV-16b-ppdk ATAATTTTGTTTAACTTTAAGAAGGAGATATACCATGGGCCATCATCATCATCATCATCA
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FtPPDK-ref ------------------------------------------------------------
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pETEV-16b-ppdk TCATCATCACAGCAGCGGCCATGAAAACCTGTATTTTCAGGGACATATGACCGCTAAAAA
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FtPPDK-ref -------------------------------------------CATATGACCGCTAAAAA
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*****************
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pETEV-16b-ppdk ACGCGTGTTTACGTTCGGCAAAGGTCGCTCGGAAGGCAACCGTGACATGAAATCGCTGCT
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FtPPDK-ref ACGCGTGTTTACGTTCGGCAAAGGTCGCTCGGAAGGCAACCGTGACATGAAATCGCTGCT
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************************************************************
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pETEV-16b-ppdk GGGTGGCAAAGGTGCGAACCTGGCGGAAATGAGCTCTATTGGTCTGTCCGTGCCGCCGGG
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FtPPDK-ref GGGTGGCAAAGGTGCGAACCTGGCGGAAATGAGCTCTATTGGTCTGTCCGTGCCGCCGGG
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************************************************************
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pETEV-16b-ppdk TCTGACCATCTCAACGGAAGCCTGCGAAGAATATCAGCAAAATGGTAAATCGCTGCCGCC
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FtPPDK-ref TCTGACCATCTCAACGGAAGCCTGCGAAGAATATCAGCAAAATGGTAAATCGCTGCCGCC
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************************************************************
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pETEV-16b-ppdk GGGCCTGTGGGATGAAATCAGCGAAGGTCTGGACTACGTTCAGAAAGAAATGTCAGCCTC
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FtPPDK-ref GGGCCTGTGGGATGAAATCAGCGAAGGTCTGGACTACGTTCAGAAAGAAATGTCAGCCTC
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************************************************************
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pETEV-16b-ppdk GCTGGGCGATCCGTCGAAACCGCTGCTGCTGAGCGTCCGTTCTGGTGCGGCCATTAGCAT
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FtPPDK-ref GCTGGGCGATCCGTCGAAACCGCTGCTGCTGAGCGTCCGTTCTGGTGCGGCCATTAGCAT
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************************************************************
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pETEV-16b-ppdk GCCGGGCATGATGGATACCGTTCTGAACCTGGGTCTGAATGACGAAGTGGTTGCAGGTCT
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FtPPDK-ref GCCGGGCATGATGGATACCGTTCTGAACCTGGGTCTGAATGACGAAGTGGTTGCAGGTCT
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************************************************************
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pETEV-16b-ppdk GGCCGGTAAATCGGGTGCTCGTTTCGCGTATGATAGCTACCGTCGCTTTCTGGACATGTT
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FtPPDK-ref GGCCGGTAAATCGGGTGCTCGTTTCGCGTATGATAGCTACCGTCGCTTTCTGGACATGTT
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************************************************************
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pETEV-16b-ppdk CGGTAACGTCGTGATGGGCATCCCGCATAGCCTGTTTGATGAAAAACTGGAACAGATGAA
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FtPPDK-ref CGGTAACGTCGTGATGGGCATCCCGCATAGCCTGTTTGATGAAAAACTGGAACAGATGAA
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************************************************************
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pETEV-16b-ppdk AGCCGAAAAAGGTATTCACCTGGATACCGACCTGACGGCAGCTGATCTGAAAGACCTGGT
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FtPPDK-ref AGCCGAAAAAGGTATTCACCTGGATACCGACCTGACGGCAGCTGATCTGAAAGACCTGGT
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************************************************************
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pETEV-16b-ppdk GGAAAAATATAAAAACGTTTACGTCGAAGCGAAAGGCGAAAAATTCCCGACCGATCCGAA
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FtPPDK-ref GGAAAAATATAAAAACGTTTACGTCGAAGCGAAAGGCGAAAAATTCCCGACCGATCCGAA
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************************************************************
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pETEV-16b-ppdk AAAACAGCTGGAACTGGCCGTCAATGCAGTGTTTGATAGTTGGGACTCCCCGCGTGCCAA
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FtPPDK-ref AAAACAGCTGGAACTGGCCGTCAATGCAGTGTTTGATAGTTGGGACTCCCCGCGTGCCAA
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************************************************************
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pETEV-16b-ppdk CAAATATCGCTCCATTAATCAGATCACCGGTCTGAAAGGCACGGCAGTGAATATTCAATC
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FtPPDK-ref CAAATATCGCTCCATTAATCAGATCACCGGTCTGAAAGGCACGGCAGTGAATATTCAATC
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************************************************************
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pETEV-16b-ppdk TATGGTTTTCGGTAACATGGGCAATACCAGTGGCACGGGTGTGCTGTTTACCCGTAACCC
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FtPPDK-ref TATGGTTTTCGGTAACATGGGCAATACCAGTGGCACGGGTGTGCTGTTTACCCGTAACCC
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************************************************************
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pETEV-16b-ppdk GAGCACGGGCGAGAAAAAACTGTACGGCGAATTCCTGATTAATGCCCAGGGTGAAGATGT
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FtPPDK-ref GAGCACGGGCGAGAAAAAACTGTACGGCGAATTCCTGATTAATGCCCAGGGTGAAGATGT
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************************************************************
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pETEV-16b-ppdk TGTCGCAGGCATCCGCACCCCGGAAGATCTGGGTACCATGGAAACGTGCATGCCGGAAGC
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FtPPDK-ref TGTCGCAGGCATCCGCACCCCGGAAGATCTGGGTACCATGGAAACGTGCATGCCGGAAGC
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************************************************************
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pETEV-16b-ppdk GTATAAAGAACTGGTGGAAAACTGTGAAATTCTGGAACGTCATTACAAAGATATGATGGA
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FtPPDK-ref GTATAAAGAACTGGTGGAAAACTGTGAAATTCTGGAACGTCATTACAAAGATATGATGGA
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************************************************************
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pETEV-16b-ppdk CATCGAATTCACCGTTCAGGAAAATCGCCTGTGGATGCTGCAATGTCGTACCGGTAAACG
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FtPPDK-ref CATCGAATTCACCGTTCAGGAAAATCGCCTGTGGATGCTGCAATGTCGTACCGGTAAACG
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************************************************************
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pETEV-16b-ppdk CACGGGCAAAGGTGCTGTGCGTATTGCGGTTGATATGGTCAACGAAGGCCTGATTGACAC
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FtPPDK-ref CACGGGCAAAGGTGCTGTGCGTATTGCGGTTGATATGGTCAACGAAGGCCTGATTGACAC
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************************************************************
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pETEV-16b-ppdk CCGTACGGCAATCAAACGCGTTGAAACCCAGCATCTGGATCAACTGCTGCACCCGCAGTT
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FtPPDK-ref CCGTACGGCAATCAAACGCGTTGAAACCCAGCATCTGGATCAACTGCTGCACCCGCAGTT
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************************************************************
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pETEV-16b-ppdk CGAAGACCCGTCAGCGTATAAATCGCATGTGGTTGCCACCGGTCTGCCGGCATCCCCGGG
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FtPPDK-ref CGAAGACCCGTCAGCGTATAAATCGCATGTGGTTGCCACCGGTCTGCCGGCATCCCCGGG
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************************************************************
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pETEV-16b-ppdk TGCAGCAGTGGGCCAGGTTTGCTTTTCAGCTGAAGATGCGGAAACGTGGCACGCTCAGGG
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FtPPDK-ref TGCAGCAGTGGGCCAGGTTTGCTTTTCAGCTGAAGATGCGGAAACGTGGCACGCTCAGGG
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************************************************************
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pETEV-16b-ppdk TAAATCCGCGATCCTGGTGCGCACCGAAACGTCACCGGAAGATGTTGGCGGTATGCATGC
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FtPPDK-ref TAAATCCGCGATCCTGGTGCGCACCGAAACGTCACCGGAAGATGTTGGCGGTATGCATGC
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************************************************************
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pETEV-16b-ppdk AGCTGCGGGCATTCTGACCGCACGTGGCGGTATGACGTCCCACGCAGCAGTCGTGGCTCG
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FtPPDK-ref AGCTGCGGGCATTCTGACCGCACGTGGCGGTATGACGTCCCACGCAGCAGTCGTGGCTCG
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************************************************************
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pETEV-16b-ppdk CGGCTGGGGTAAATGCTGTGTCTCAGGTTGTGCGGATATCCGTGTGAACGATGACATGAA
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FtPPDK-ref CGGCTGGGGTAAATGCTGTGTCTCAGGTTGTGCGGATATCCGTGTGAACGATGACATGAA
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************************************************************
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pETEV-16b-ppdk AATCTTCACCATCGGTGATCGCGTGATCAAAGAAGGCGACTGGCTGAGCCTGAACGGTAC
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FtPPDK-ref AATCTTCACCATCGGTGATCGCGTGATCAAAGAAGGCGACTGGCTGAGCCTGAACGGTAC
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************************************************************
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pETEV-16b-ppdk CACGGGCGAAGTTATTCTGGGTAAACAGCTGCTGGCACCGCCGGCAATGTCTAATGATCT
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FtPPDK-ref CACGGGCGAAGTTATTCTGGGTAAACAGCTGCTGGCACCGCCGGCAATGTCTAATGATCT
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************************************************************
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pETEV-16b-ppdk GGAAATCTTTATGAGTTGGGCTGACCAGGCGCGTCGCCTGAAAGTGATGGCTAACGCGGA
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FtPPDK-ref GGAAATCTTTATGAGTTGGGCTGACCAGGCGCGTCGCCTGAAAGTGATGGCTAACGCGGA
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************************************************************
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pETEV-16b-ppdk TACCCCGAATGACGCCCTGACGGCACGTAACAATGGTGCACAGGGTATTGGTCTGTGCCG
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FtPPDK-ref TACCCCGAATGACGCCCTGACGGCACGTAACAATGGTGCACAGGGTATTGGTCTGTGCCG
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************************************************************
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pETEV-16b-ppdk TACCGAACACATGTTTTTCGCTTCTGATGAACGTATTAAAGCGGTCCGCAAAATGATCAT
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FtPPDK-ref TACCGAACACATGTTTTTCGCTTCTGATGAACGTATTAAAGCGGTCCGCAAAATGATCAT
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************************************************************
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pETEV-16b-ppdk GGCCGTGACGCCGGAACAGCGTAAAGTTGCTCTGGATCTGCTGCTGCCGTATCAACGTAG
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FtPPDK-ref GGCCGTGACGCCGGAACAGCGTAAAGTTGCTCTGGATCTGCTGCTGCCGTATCAACGTAG
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************************************************************
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pETEV-16b-ppdk TGACTTTGAAGGTATTTTCCGCGCAATGGATGGCCTGCCGGTGACCATCCGTCTGCTGGA
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FtPPDK-ref TGACTTTGAAGGTATTTTCCGCGCAATGGATGGCCTGCCGGTGACCATCCGTCTGCTGGA
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************************************************************
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pETEV-16b-ppdk TCCGCCGCTGCATGAATTTCTGCCGGAAGGTGATCTGGAACACATTGTTAACGAACTGGC
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FtPPDK-ref TCCGCCGCTGCATGAATTTCTGCCGGAAGGTGATCTGGAACACATTGTTAACGAACTGGC
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************************************************************
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pETEV-16b-ppdk AGTCGATACGGGCATGAGCGCTGACGAAATCTACTCTAAAATCGAAAACCTGAGTGAAGT
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FtPPDK-ref AGTCGATACGGGCATGAGCGCTGACGAAATCTACTCTAAAATCGAAAACCTGAGTGAAGT
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************************************************************
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pETEV-16b-ppdk TAATCCGATGCTGGGTTTCCGTGGCTGTCGCCTGGGTATTTCGTACCCGGAACTGACCGA
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FtPPDK-ref TAATCCGATGCTGGGTTTCCGTGGCTGTCGCCTGGGTATTTCGTACCCGGAACTGACCGA
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************************************************************
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pETEV-16b-ppdk AATGCAGGTTCGTGCCATCTTTCAAGCTGCGGTCAGCATGACCAACCAGGGTGTGACGGT
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FtPPDK-ref AATGCAGGTTCGTGCCATCTTTCAAGCTGCGGTCAGCATGACCAACCAGGGTGTGACGGT
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************************************************************
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pETEV-16b-ppdk TATTCCGGAAATCATGGTCCCGCTGGTTGGCACCCCGCAGGAACTGCGTCACCAAATTTC
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FtPPDK-ref TATTCCGGAAATCATGGTCCCGCTGGTTGGCACCCCGCAGGAACTGCGTCACCAAATTTC
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************************************************************
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pETEV-16b-ppdk TGTTATCCGCGGCGTCGCCGCAAATGTGTTTGCGGAAATGGGTGTCACCCTGGAATATAA
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FtPPDK-ref TGTTATCCGCGGCGTCGCCGCAAATGTGTTTGCGGAAATGGGTGTCACCCTGGAATATAA
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************************************************************
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pETEV-16b-ppdk AGTGGGCACGATGATTGAAATCCCGCGTGCTGCGCTGATTGCGGAAGAAATCGGTAAAGA
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FtPPDK-ref AGTGGGCACGATGATTGAAATCCCGCGTGCTGCGCTGATTGCGGAAGAAATCGGTAAAGA
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************************************************************
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pETEV-16b-ppdk AGCCGATTTCTTTAGCTTTGGCACCAACGACCTGACCCAGATGACGTTCGGTTATAGTCG
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FtPPDK-ref AGCCGATTTCTTTAGCTTTGGCACCAACGACCTGACCCAGATGACGTTCGGTTATAGTCG
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************************************************************
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pETEV-16b-ppdk CGATGACGTGGGCAAATTTCTGCAAATTTACCTGGCCCAGGGTATCCTGCAACATGATCC
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FtPPDK-ref CGATGACGTGGGCAAATTTCTGCAAATTTACCTGGCCCAGGGTATCCTGCAACATGATCC
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************************************************************
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pETEV-16b-ppdk GTTTGAAGTTATTGACCAGAAAGGCGTCGGTCAACTGATCAAAATGGCAACCGAAAAAGG
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FtPPDK-ref GTTTGAAGTTATTGACCAGAAAGGCGTCGGTCAACTGATCAAAATGGCAACCGAAAAAGG
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************************************************************
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pETEV-16b-ppdk CCGCGCCGCAAATCCGAGTCTGAAAGTGGGTATTTGCGGCGAACACGGCGGTGAACCGAG
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FtPPDK-ref CCGCGCCGCAAATCCGAGTCTGAAAGTGGGTATTTGCGGCGAACACGGCGGTGAACCGAG
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************************************************************
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pETEV-16b-ppdk TTCCGTGGCGTTTTTCGATGGCGTTGGTCTGGACTACGTTAGTTGTTCCCCGTTTCGTGT
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FtPPDK-ref TTCCGTGGCGTTTTTCGATGGCGTTGGTCTGGACTACGTTAGTTGTTCCCCGTTTCGTGT
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************************************************************
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pETEV-16b-ppdk CCCGATTGCCCGTCTGGCTGCCGCCCAAGTGATTGTTTAACTCGAGGATCCGGCTGCTAA
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FtPPDK-ref CCCGATTGCCCGTCTGGCTGCCGCCCAAGTGATTGTTTAACTCGAG--------------
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**********************************************
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pETEV-16b-ppdk CAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACC
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FtPPDK-ref ------------------------------------------------------------
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pETEV-16b-ppdk CCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTG
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FtPPDK-ref -------------------------------------
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