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@ -10,16 +10,16 @@
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\usetheme{metropolis}
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\metroset{block=fill}
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\setdefaultlanguage[variant=german,
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spelling=new,
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latesthyphen=true]{german}
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\setotherlanguage[variant=usmax]{english}
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\setdefaultlanguage[variant=usmax]{english}
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\setotherlanguage[variant=german,
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spelling=new,
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latesthyphen=true]{german}
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\title{eLabFTW}
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\subtitle{Das freie elektronische Laborjournal}
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\subtitle{Free Electronic Lab Notebook}
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\author[Alexander Minges]{\includegraphics[width=0.2\textwidth]{img/elabftw-logo-small.pdf}\\Alexander Minges}
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\institute[Biochemische Pflanzenphysiologie]{Institut für Biochemische Pflanzenphysiologie\\Heinrich-Heine-Universität Düsseldorf}
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\date{\scriptsize IRTG Lecture Series -- „Thementag Elektronische Laborbücher“\\26. März 2019}
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\institute[Biochemical Plant Physiology]{Institute of Biochemical Plant Physiology\\Heinrich Heine University Düsseldorf}
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\date{\scriptsize \textquote{Thementag Elektronische Laborbücher}\\26. March 2019 -- University of Rostock}
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\hypersetup{pdfauthor={Alexander Minges}}
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@ -34,36 +34,36 @@
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\maketitle
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\section{Einführung}
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\section{Introduction}
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\begin{frame}
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\frametitle{Was ist eLabFTW?}
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eLabFTW ist ein generisches elektronisches Laborjournal (ELN)
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\frametitle{What is eLabFTW?}
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eLabFTW is a generic electronic lab notebook (ELN)
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\pause
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\begin{itemize}
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\item Offene und freie Software (GNU AGPL 3.0~\includegraphics[height=1.0em]{img/AGPLv3_Logo.pdf})\pause
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\item Gemeinschaftliche Entwicklung durch \\ Freiwillige -- von Wissenschaftlern, für Wissenschaftler\pause
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\item Browser basierte Benutzeroberfläche, kompatibel mit allen gängigen Browsern und (Mobil-) Geräten\pause
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\item Übersetzt in verschiedene Sprachen
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\item Free and open-source software (GNU AGPL 3.0~\includegraphics[height=1.0em]{img/AGPLv3_Logo.pdf})\pause
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\item Community-driven development -- by scientists, \\for scientists\pause
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\item Browser-based user interface compatible with all commonly used browsers and (mobile) devices\pause
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\item Multilingual
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\end{itemize}
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\end{frame}
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\begin{frame}
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\frametitle{Was ist eLabFTW?}
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\frametitle{What is eLabFTW?}
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\begin{center}
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\large eLabFTW ist eine freie und offene Software (FLOSS)
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\large eLabFTW is free and open-source software (FLOSS)
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\end{center}
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\pause
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\begin{description}
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\item[Frei wie in \textquote{Freibier}] eLabFTW ist jederzeit \textbf{kostenlos} verfügbar
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\item[Frei wie in \textquote{Freiheit}] der \textbf{Quelltext} steht offen zur Verfügung, kann \textbf{angepasst, verändert und weiterverbreitet} werden
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\item[Free as in \textquote{beer}] eLabFTW is (and will always be) \\available \textbf{free of charge}
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\item[Free as in \textquote{freedom of speech}] Its \textbf{source code} is available and can be \textbf{adjusted, changed and freely distributed}
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\end{description}
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\end{frame}
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\begin{frame}
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\frametitle{Warum elektronische Laborbücher?}
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\frametitle{Why electronic lab notebooks?}
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\begin{center}
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\large Analoge Laborbücher sind ein Anachronismus\ldots
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\large Hand-written lab notebooks are anachronistic\ldots
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\end{center}
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\pause
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\begin{figure}
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@ -74,27 +74,28 @@
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\end{frame}
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\begin{frame}
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\frametitle{Eine kurze Historie}
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\frametitle{A brief history of eLabFTW}
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\Huge\faClock\normalsize
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\begin{description}
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\item[2012] Initiiert von Nicolas Carpi am \emph{Institut Curie}
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\item[Feb. 2013] Erste veröffentlichte Version (0.7.0)
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\item[2018] Offiziell durch das \emph{Institut Curie} unterstütztes Softwareprojekt
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\item[Aug. 2018] Veröffentlichung der aktuellen stabilen Version 2.0
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\item[März 2019] 2.1.0-alpha
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\item[2012] Initiated by Nicolas Carpi at the \emph{Institut Curie}
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\item[Feb. 2013] First public version (0.7.0)
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\item[2018] Announced as an officially supported software project by the \emph{Institut Curie}
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\item[Aug. 2018] Current major version 2.0 released
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\item[Mar. 2019] Feature preview 2.1.0-alpha
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\end{description}
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\end{frame}
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\begin{frame}
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\frametitle{eLabFTW arbeitet platformunabhängig}
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\frametitle{eLabFTW is platform independent}
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\begin{center}
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\Huge\faPhp\hspace{1em}\faDatabase\hspace{1em}\faServer
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\end{center}
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\begin{itemize}
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\item Installation auf zentralem \textbf{Server} (Webserver + PHP + MySQL/MariaDB)
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\item Zugriff über \textbf{Webbrowser} auf Endgeräten (Desktop, Notebook, Tablet, Smartphone)
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\item \textbf{Keine Installation spezieller Software} auf dem Client nötig, keine Bindung an bestimmte \textbf{Betriebssysteme}
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\item Installation on a \textbf{server} (Webserver + PHP + MySQL/MariaDB)
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\item Access via \textbf{web browser} on many different clients (desktop, notebook, tablet, smartphone)
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\item \textbf{No client software} needed
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\item No dependency on specific \textbf{operating systems}
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\end{itemize}
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\begin{center}
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@ -105,17 +106,17 @@
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\begin{frame}
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\frametitle{eLabFTW wird weltweit eingesetzt}
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\frametitle{Used worldwide}
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\begin{figure}
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\includegraphics[width=0.9\textwidth]{img/users.pdf}
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\end{figure}
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\end{frame}
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\section{Funktionsumfang}
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\section{Features}
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\begin{frame}
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\frametitle{Benutzeroberfläche}
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\centering eLabFTW verfügt über eine moderne und übersichtliche Benutzeroberfläche
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\frametitle{User interface}
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\centering eLabFTW features a modern and clean UI
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\begin{figure}
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\centering
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\includegraphics[width=\textwidth]{img/elab/elab_01.png}
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@ -123,34 +124,34 @@
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\end{frame}
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\begin{frame}
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\frametitle{Datenmodell}
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\frametitle{Data Model}
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\huge\faFlask\hspace{0.5em}\large Experimente\normalsize
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\begin{itemize}
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\item Frei definierbarer \textbf{Status} (z.B. \textquote{abgeschlossen}, \textquote{laufend} \ldots)
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\item \textbf{Zeitstempel} möglich
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\item Definierung von \textbf{Vorlagen und Schritten}
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\item Freely definable \textbf{status} (e.g. \textquote{finished}, \textquote{in progress} \ldots)
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\item \textbf{time stamping} of experiments
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\item Definition of \textbf{templates and stepped procedures}
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\end{itemize}
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\end{frame}
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\begin{frame}
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\frametitle{Datenmodell}
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\huge\faDatabase\hspace{0.5em}\large Datenbankeinträge\normalsize
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\frametitle{Data model}
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\huge\faDatabase\hspace{0.5em}\large Database entries\normalsize
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\begin{itemize}
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\item Definierung von \textbf{Vorlagen und Subtypen}
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\item Nutzbar für z.B. Laborinventar, Protokolle
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\item Definition von \textbf{buchbaren Einträgen} möglich
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\item \textbf{Templates and sub types}
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\item Use cases: laboratory inventory, protocols, \ldots
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\item Calendar with \textbf{bookable items} (e.g.\ technical facilities)
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\end{itemize}
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\pause
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\huge\faTag\hspace{0.5em}\large Kategorisierung\normalsize
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\huge\faTag\hspace{0.5em}\large Categorization\normalsize
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\begin{itemize}
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\item Frei definierbare Schlagwörter (\emph{Tags})
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\item Freely choosable \textbf{tags}
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\end{itemize}
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\end{frame}
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\begin{frame}
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\frametitle{Erstellen von Experimenten und Datenbankeinträgen}
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\only<1>{\centering Bearbeitung im grafischen Texteditor}
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\only<2>{\centering Anhängen von Dateien mit Vorschau}
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\frametitle{Creating experiments and database items}
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\only<1>{\centering Rich text editor}
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\only<2>{\centering Attaching of files with previews}
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\begin{figure}
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\centering
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\only<1>{\includegraphics[width=\textwidth]{img/elab/elab_editor1.png}}
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@ -159,8 +160,8 @@
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\end{frame}
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\begin{frame}
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\frametitle{Laborinventar}
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\centering Inventarverwaltung mit frei definierbaren Vorlagen
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\frametitle{Laboratory inventory}
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\centering Inventory management using templates
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\begin{figure}
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\centering
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\includegraphics[width=\textwidth]{img/elab/elab_03.png}
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@ -168,8 +169,8 @@
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\end{frame}
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\begin{frame}
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\frametitle{Integrierter Zeitplan}
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\centering Buchung von Geräten über integrierten Kalender
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\frametitle{Integrated calendar}
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\centering Booking equipment and facilities
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\begin{figure}
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\centering
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\includegraphics[width=0.8\textwidth]{img/elab/elab_02.png}
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@ -177,39 +178,39 @@
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\end{frame}
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\begin{frame}
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\frametitle{Erstellen von Experimenten und Datenbankeinträgen}
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Weitere Funktionen
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\frametitle{Creating experiments and database items}
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Additional features
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\begin{itemize}
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\item Eingabe alternativ als \textbf{strukturierter Text} (Markdown)\pause
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\item \textbf{Vorschau} gängiger Dateiformate (u.a. PDF, TIFF, PDB, SDF,\ldots)\pause
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\item \textbf{Versionierung} von Einträgen und angehängten Daten\pause
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\item \textbf{Verlinkung} von Experimenten/Datenbankeinträgen auch untereinander\pause
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\item \textbf{Freigabe} von Experimenten für andere Benutzer\pause
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\item Satz \textbf{mathematischer Formeln}
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\item Alternative input syntax: \textbf{structured text} (Markdown)\pause
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\item \textbf{Preview} of common file formats (u.a. PDF, TIFF, PDB, SDF,\ldots)\pause
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\item \textbf{Versioning} of entries and attached files\pause
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\item \textbf{Linking} of/between experiments and database items\pause
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\item \textbf{Sharing} experimens with other users\pause
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\item Rendering of \textbf{math formula}
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\end{itemize}
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\end{frame}
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\begin{frame}
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\frametitle{Kommende Funktionen}
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Neu in 2.1.0 (unvollständig):
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\frametitle{Upcoming features}
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New in 2.1.0 (incomplete):
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\begin{itemize}
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\item Möglichkeit zum Einbinden einer \textbf{Datenschutzerklärung} (Stichwort „DSGVO“)
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\item \textbf{Mailinglisten}-Funktion
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\item Erstellung von \textbf{Berichten} im Admin-Interface (z.B. zur Speichernutzung)
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\item Diverse Änderungen „unter der Haube“
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\item Possibility to include a \textbf{privacy statement} (\textquote{GDPR-complicance})
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\item \textbf{Mailinglists}
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\item \textbf{Reports} in admin interface (e.g. disk space usage)
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\item Miscellaneous things \textquote{under the hood}
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\end{itemize}
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\end{frame}
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\begin{frame}
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\frametitle{Zeitstempel}
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Fixierung von Experimenten mittels Zeitstempel
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\frametitle{Time stamping}
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Status of experiments
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\begin{columns}[c]
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\begin{column}{0.8\textwidth}
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\begin{itemize}
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\small
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\item Nachweis eines definierten Zustandes zum Zeitpunkt \textquote{X}
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\item Zeitstempeldienst (TSA) nach RFC 3161 (z.B. DFN)
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\item Datenintegrität mittels Signatur überprüfbar
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\item Proof of defined status at time point \textquote{X}
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\item Time stamping authority (TSA) according to RFC~3161 (e.g. DFN)
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\item Verification of data integrity by cryptographic hash (SHA256)
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\end{itemize}
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\end{column}
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\begin{column}{0.2\textwidth}
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\centering
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\includegraphics[width=0.95\textwidth]{img/elab/ts01.png}
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\end{figure}
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\blfootnote{Abbildung: Wikimedia Commons; CC BY-SA 4.0 \faCreativeCommons~\faCreativeCommonsBy~\faCreativeCommonsSa\hspace{1em}}
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\blfootnote{Figure: Wikimedia Commons; CC BY-SA 4.0 \faCreativeCommons~\faCreativeCommonsBy~\faCreativeCommonsSa\hspace{1em}}
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\end{frame}
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\begin{frame}
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\frametitle{Datenexport/-import}
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\frametitle{Data export/import}
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\begin{itemize}
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\item Export einzelner Experimente und Datenbankeinträge inkl. angehängter Dateien als \textbf{ZIP}
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\item Export als \textbf{PDF-Datei} mit Vorschau angehängter Dateien
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\item Massenexport als \textbf{CSV} (nur Text) und ZIP (inkl. Dateien)
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\item Import von Tabellen im CSV-Format als Experimente oder Datenbankeinträge
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\item Export of single experiments and data items as \textbf{ZIP} archive
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\item Export as \textbf{PDF} including preview of attached files (if possible)
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\item Mass export as \textbf{CSV} (text-only) or \textbf{ZIP} archive (incl. attached files)
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\item Import of tables (\textbf{CSV}) to create experiments or database items
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\end{itemize}
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\centering
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\huge\faFileArchive\hspace{0.75em}\faFilePdf\hspace{0.75em}\faFile
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\end{frame}
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\section{Einbindung in bestehende Infrastruktur}
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\section{Integration into existing infrastructure}
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\begin{frame}
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\frametitle{Benutzerauthentifizierung}
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\frametitle{User authentification}
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\begin{itemize}
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\item Nach Installation: Lokale Benutzerkonten
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\item Einbindung in zentrale Identitätsmanagementsysteme möglich (SAML 2.0)
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\item Kombination von lokalen und zentralen Zugängen möglich
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\item Default after installation: local user accounts
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\item Itegration into existing identity management (SAML 2.0)
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\item Combination of local and centrally managed accounts possible
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\end{itemize}
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\begin{center}
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\huge\faUsers\normalsize
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\end{frame}
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\begin{frame}
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\frametitle{API-Zugriff}
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Zugriff über öffentliche REST-API
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\frametitle{API access}
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Access via public REST API
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\begin{itemize}
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\item Interaktion mit Geräten und Prozessen
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\item Automatisches Anlegen/Abschließen von Experimenten
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\item Hochladen von Daten zu eLabFTW
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\item Datenexport im JSON-Format
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\item Interaction with lab equipment and processes
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\item Automated creation/termination of experiments
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\item Upload of files to eLabFTW
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\item Data export in JSON format
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\end{itemize}
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\end{frame}
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\begin{frame}[fragile]
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\frametitle{API-Zugriff}
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\begin{block}{Erstellen eines Experimentes aus der \emph{bash} heraus}
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\frametitle{API access}
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\begin{block}{Creating an experiment using \emph{bash} scripts}
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\scriptsize\begin{verbatim}
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#!/bin/bash
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export API_KEY=XXXXX
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curl -X POST -H "Authorization: $API_KEY" \
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"https://elabftw.example.org/api/v1/experiments"
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# Datei zu Experiment 3 hochladen
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# Upload and attach file to experiment 3
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curl -X POST -F "file=@your-file.jpg" -H \
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"Authorization: $API_KEY" \
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"https://elabftw.example.org/api/v1/experiments/3"
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@ -279,21 +280,21 @@
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\end{frame}
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\begin{frame}
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\frametitle{API-Zugriff}
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\frametitle{API access}
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\begin{figure}
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\centering
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\includegraphics[width=0.5\textwidth]{img/python-logo.pdf}
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\end{figure}
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\begin{figure}
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\centering
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Python-Bibliothek zur einfachen Interaktion mit eLabFTW:\vspace{1em}
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Python library for easy interaction with eLabFTW:\vspace{1em}
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\includegraphics[width=0.25\textwidth]{img/elab/elabapy.png}
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\end{figure}
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\end{frame}
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\begin{frame}[fragile]
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\frametitle{API-Zugriff}
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\begin{block}{Erstellen eines Experimentes mit \emph{python}}
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\frametitle{API access}
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\begin{block}{Creating an experiment using \emph{python}}
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\tiny\begin{verbatim}
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#!/sbin/env python
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import elabapy
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@ -307,13 +308,13 @@
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\end{verbatim}
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\end{block}
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\pause
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Weitere Beispiele:~\small\url{https://doc.elabftw.net/api.html}
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Additional examples:~\small\url{https://doc.elabftw.net/api.html}
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\end{frame}
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\section{Wie ausprobieren?}
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\section{How to try?}
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\begin{frame}
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\frametitle{Demo-Installation}
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\frametitle{Demo}
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\begin{figure}
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\centering
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\includegraphics[width=0.5\textwidth]{img/elabftw-logo.pdf}
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|
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@ -332,40 +333,40 @@
|
|||
\url{https://doc.elabftw.net/install.html}
|
||||
\end{frame}
|
||||
|
||||
\section{Zum Abschluss}
|
||||
\section{Finally}
|
||||
|
||||
\begin{frame}
|
||||
\frametitle{Weitere Fragen?}
|
||||
\frametitle{Further questions?}
|
||||
\begin{center}
|
||||
\huge\faGlobe\normalsize
|
||||
\end{center}
|
||||
\begin{description}
|
||||
\item[Website] \small\url{https://www.elabftw.net}\normalsize
|
||||
\item[Hilfe] \small\url{https://doc.elabftw.net}\normalsize
|
||||
\item[Quelltext] \small\url{https://github.com/elabftw/elabftw}\normalsize
|
||||
\item[Documentation] \small\url{https://doc.elabftw.net}\normalsize
|
||||
\item[Source code] \small\url{https://github.com/elabftw/elabftw}\normalsize
|
||||
\end{description}
|
||||
\vfill
|
||||
\begin{center}
|
||||
\huge\faEnvelope\normalsize
|
||||
|
||||
\url{alexander.minges@hhu.de} \\
|
||||
\url{nicolas.carpi@curie.fr}
|
||||
\url{alexander.minges@hhu.de}~(de/en)\\
|
||||
\url{nicolas.carpi@curie.fr}~(fr/en)
|
||||
\end{center}
|
||||
\end{frame}
|
||||
|
||||
\begin{frame}
|
||||
\frametitle{Danksagung}
|
||||
\frametitle{Acknowledgments}
|
||||
\begin{columns}[c]
|
||||
\begin{column}{0.7\textwidth}
|
||||
Prof.~Dr.~Georg Groth\\
|
||||
Biochemische Pflanzenphysiologie\\
|
||||
\emph{Heinrich-Heine-Universität}
|
||||
Institute of Biochemical Plant Physiology\\
|
||||
\emph{Heinrich Heine University Düsseldorf}
|
||||
|
||||
\vspace{3em}
|
||||
|
||||
Nicolas Carpi\\
|
||||
\emph{Institut Curie, Paris}\\
|
||||
Frankreich
|
||||
France
|
||||
\end{column}
|
||||
\begin{column}{0.3\textwidth}
|
||||
\includegraphics[width=\textwidth]{img/hhu-logo.pdf}
|
||||
|
|
@ -380,9 +381,9 @@
|
|||
\end{frame}
|
||||
|
||||
\begin{frame}
|
||||
\frametitle{Abschließend\ldots}
|
||||
\frametitle{Finally\ldots}
|
||||
\begin{center}
|
||||
\Huge Vielen Dank für Ihre Aufmerksamkeit!
|
||||
\Huge Thank you for your kind attention!
|
||||
\end{center}
|
||||
\end{frame}
|
||||
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue