Material und Methoden vervollständigt; Beginn Ergebnisteil
This commit is contained in:
parent
9119d1667b
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8871a9ffe7
19 changed files with 45743 additions and 2011 deletions
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@ -1,194 +0,0 @@
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CLUSTAL 2.1 multiple sequence alignment
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pETEV-16b-ppdk ATAATTTTGTTTAACTTTAAGAAGGAGATATACCATGGGCCATCATCATCATCATCATCA
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FtPPDK-ref ------------------------------------------------------------
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pETEV-16b-ppdk TCATCATCACAGCAGCGGCCATGAAAACCTGTATTTTCAGGGACATATGACCGCTAAAAA
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FtPPDK-ref -------------------------------------------CATATGACCGCTAAAAA
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*****************
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pETEV-16b-ppdk ACGCGTGTTTACGTTCGGCAAAGGTCGCTCGGAAGGCAACCGTGACATGAAATCGCTGCT
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FtPPDK-ref ACGCGTGTTTACGTTCGGCAAAGGTCGCTCGGAAGGCAACCGTGACATGAAATCGCTGCT
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************************************************************
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pETEV-16b-ppdk GGGTGGCAAAGGTGCGAACCTGGCGGAAATGAGCTCTATTGGTCTGTCCGTGCCGCCGGG
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FtPPDK-ref GGGTGGCAAAGGTGCGAACCTGGCGGAAATGAGCTCTATTGGTCTGTCCGTGCCGCCGGG
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************************************************************
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pETEV-16b-ppdk TCTGACCATCTCAACGGAAGCCTGCGAAGAATATCAGCAAAATGGTAAATCGCTGCCGCC
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FtPPDK-ref TCTGACCATCTCAACGGAAGCCTGCGAAGAATATCAGCAAAATGGTAAATCGCTGCCGCC
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************************************************************
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pETEV-16b-ppdk GGGCCTGTGGGATGAAATCAGCGAAGGTCTGGACTACGTTCAGAAAGAAATGTCAGCCTC
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FtPPDK-ref GGGCCTGTGGGATGAAATCAGCGAAGGTCTGGACTACGTTCAGAAAGAAATGTCAGCCTC
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************************************************************
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pETEV-16b-ppdk GCTGGGCGATCCGTCGAAACCGCTGCTGCTGAGCGTCCGTTCTGGTGCGGCCATTAGCAT
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FtPPDK-ref GCTGGGCGATCCGTCGAAACCGCTGCTGCTGAGCGTCCGTTCTGGTGCGGCCATTAGCAT
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************************************************************
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pETEV-16b-ppdk GCCGGGCATGATGGATACCGTTCTGAACCTGGGTCTGAATGACGAAGTGGTTGCAGGTCT
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FtPPDK-ref GCCGGGCATGATGGATACCGTTCTGAACCTGGGTCTGAATGACGAAGTGGTTGCAGGTCT
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************************************************************
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pETEV-16b-ppdk GGCCGGTAAATCGGGTGCTCGTTTCGCGTATGATAGCTACCGTCGCTTTCTGGACATGTT
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FtPPDK-ref GGCCGGTAAATCGGGTGCTCGTTTCGCGTATGATAGCTACCGTCGCTTTCTGGACATGTT
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************************************************************
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pETEV-16b-ppdk CGGTAACGTCGTGATGGGCATCCCGCATAGCCTGTTTGATGAAAAACTGGAACAGATGAA
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FtPPDK-ref CGGTAACGTCGTGATGGGCATCCCGCATAGCCTGTTTGATGAAAAACTGGAACAGATGAA
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************************************************************
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pETEV-16b-ppdk AGCCGAAAAAGGTATTCACCTGGATACCGACCTGACGGCAGCTGATCTGAAAGACCTGGT
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FtPPDK-ref AGCCGAAAAAGGTATTCACCTGGATACCGACCTGACGGCAGCTGATCTGAAAGACCTGGT
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************************************************************
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pETEV-16b-ppdk GGAAAAATATAAAAACGTTTACGTCGAAGCGAAAGGCGAAAAATTCCCGACCGATCCGAA
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FtPPDK-ref GGAAAAATATAAAAACGTTTACGTCGAAGCGAAAGGCGAAAAATTCCCGACCGATCCGAA
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************************************************************
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pETEV-16b-ppdk AAAACAGCTGGAACTGGCCGTCAATGCAGTGTTTGATAGTTGGGACTCCCCGCGTGCCAA
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FtPPDK-ref AAAACAGCTGGAACTGGCCGTCAATGCAGTGTTTGATAGTTGGGACTCCCCGCGTGCCAA
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************************************************************
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pETEV-16b-ppdk CAAATATCGCTCCATTAATCAGATCACCGGTCTGAAAGGCACGGCAGTGAATATTCAATC
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FtPPDK-ref CAAATATCGCTCCATTAATCAGATCACCGGTCTGAAAGGCACGGCAGTGAATATTCAATC
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************************************************************
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pETEV-16b-ppdk TATGGTTTTCGGTAACATGGGCAATACCAGTGGCACGGGTGTGCTGTTTACCCGTAACCC
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FtPPDK-ref TATGGTTTTCGGTAACATGGGCAATACCAGTGGCACGGGTGTGCTGTTTACCCGTAACCC
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************************************************************
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pETEV-16b-ppdk GAGCACGGGCGAGAAAAAACTGTACGGCGAATTCCTGATTAATGCCCAGGGTGAAGATGT
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FtPPDK-ref GAGCACGGGCGAGAAAAAACTGTACGGCGAATTCCTGATTAATGCCCAGGGTGAAGATGT
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************************************************************
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pETEV-16b-ppdk TGTCGCAGGCATCCGCACCCCGGAAGATCTGGGTACCATGGAAACGTGCATGCCGGAAGC
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FtPPDK-ref TGTCGCAGGCATCCGCACCCCGGAAGATCTGGGTACCATGGAAACGTGCATGCCGGAAGC
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************************************************************
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pETEV-16b-ppdk GTATAAAGAACTGGTGGAAAACTGTGAAATTCTGGAACGTCATTACAAAGATATGATGGA
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FtPPDK-ref GTATAAAGAACTGGTGGAAAACTGTGAAATTCTGGAACGTCATTACAAAGATATGATGGA
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************************************************************
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pETEV-16b-ppdk CATCGAATTCACCGTTCAGGAAAATCGCCTGTGGATGCTGCAATGTCGTACCGGTAAACG
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FtPPDK-ref CATCGAATTCACCGTTCAGGAAAATCGCCTGTGGATGCTGCAATGTCGTACCGGTAAACG
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************************************************************
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pETEV-16b-ppdk CACGGGCAAAGGTGCTGTGCGTATTGCGGTTGATATGGTCAACGAAGGCCTGATTGACAC
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FtPPDK-ref CACGGGCAAAGGTGCTGTGCGTATTGCGGTTGATATGGTCAACGAAGGCCTGATTGACAC
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************************************************************
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pETEV-16b-ppdk CCGTACGGCAATCAAACGCGTTGAAACCCAGCATCTGGATCAACTGCTGCACCCGCAGTT
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FtPPDK-ref CCGTACGGCAATCAAACGCGTTGAAACCCAGCATCTGGATCAACTGCTGCACCCGCAGTT
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************************************************************
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pETEV-16b-ppdk CGAAGACCCGTCAGCGTATAAATCGCATGTGGTTGCCACCGGTCTGCCGGCATCCCCGGG
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FtPPDK-ref CGAAGACCCGTCAGCGTATAAATCGCATGTGGTTGCCACCGGTCTGCCGGCATCCCCGGG
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************************************************************
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pETEV-16b-ppdk TGCAGCAGTGGGCCAGGTTTGCTTTTCAGCTGAAGATGCGGAAACGTGGCACGCTCAGGG
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FtPPDK-ref TGCAGCAGTGGGCCAGGTTTGCTTTTCAGCTGAAGATGCGGAAACGTGGCACGCTCAGGG
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************************************************************
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pETEV-16b-ppdk TAAATCCGCGATCCTGGTGCGCACCGAAACGTCACCGGAAGATGTTGGCGGTATGCATGC
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FtPPDK-ref TAAATCCGCGATCCTGGTGCGCACCGAAACGTCACCGGAAGATGTTGGCGGTATGCATGC
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************************************************************
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pETEV-16b-ppdk AGCTGCGGGCATTCTGACCGCACGTGGCGGTATGACGTCCCACGCAGCAGTCGTGGCTCG
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FtPPDK-ref AGCTGCGGGCATTCTGACCGCACGTGGCGGTATGACGTCCCACGCAGCAGTCGTGGCTCG
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************************************************************
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pETEV-16b-ppdk CGGCTGGGGTAAATGCTGTGTCTCAGGTTGTGCGGATATCCGTGTGAACGATGACATGAA
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FtPPDK-ref CGGCTGGGGTAAATGCTGTGTCTCAGGTTGTGCGGATATCCGTGTGAACGATGACATGAA
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************************************************************
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pETEV-16b-ppdk AATCTTCACCATCGGTGATCGCGTGATCAAAGAAGGCGACTGGCTGAGCCTGAACGGTAC
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FtPPDK-ref AATCTTCACCATCGGTGATCGCGTGATCAAAGAAGGCGACTGGCTGAGCCTGAACGGTAC
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************************************************************
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pETEV-16b-ppdk CACGGGCGAAGTTATTCTGGGTAAACAGCTGCTGGCACCGCCGGCAATGTCTAATGATCT
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FtPPDK-ref CACGGGCGAAGTTATTCTGGGTAAACAGCTGCTGGCACCGCCGGCAATGTCTAATGATCT
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************************************************************
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pETEV-16b-ppdk GGAAATCTTTATGAGTTGGGCTGACCAGGCGCGTCGCCTGAAAGTGATGGCTAACGCGGA
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FtPPDK-ref GGAAATCTTTATGAGTTGGGCTGACCAGGCGCGTCGCCTGAAAGTGATGGCTAACGCGGA
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************************************************************
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pETEV-16b-ppdk TACCCCGAATGACGCCCTGACGGCACGTAACAATGGTGCACAGGGTATTGGTCTGTGCCG
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FtPPDK-ref TACCCCGAATGACGCCCTGACGGCACGTAACAATGGTGCACAGGGTATTGGTCTGTGCCG
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************************************************************
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pETEV-16b-ppdk TACCGAACACATGTTTTTCGCTTCTGATGAACGTATTAAAGCGGTCCGCAAAATGATCAT
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FtPPDK-ref TACCGAACACATGTTTTTCGCTTCTGATGAACGTATTAAAGCGGTCCGCAAAATGATCAT
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************************************************************
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pETEV-16b-ppdk GGCCGTGACGCCGGAACAGCGTAAAGTTGCTCTGGATCTGCTGCTGCCGTATCAACGTAG
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FtPPDK-ref GGCCGTGACGCCGGAACAGCGTAAAGTTGCTCTGGATCTGCTGCTGCCGTATCAACGTAG
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************************************************************
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pETEV-16b-ppdk TGACTTTGAAGGTATTTTCCGCGCAATGGATGGCCTGCCGGTGACCATCCGTCTGCTGGA
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FtPPDK-ref TGACTTTGAAGGTATTTTCCGCGCAATGGATGGCCTGCCGGTGACCATCCGTCTGCTGGA
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************************************************************
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pETEV-16b-ppdk TCCGCCGCTGCATGAATTTCTGCCGGAAGGTGATCTGGAACACATTGTTAACGAACTGGC
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FtPPDK-ref TCCGCCGCTGCATGAATTTCTGCCGGAAGGTGATCTGGAACACATTGTTAACGAACTGGC
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************************************************************
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pETEV-16b-ppdk AGTCGATACGGGCATGAGCGCTGACGAAATCTACTCTAAAATCGAAAACCTGAGTGAAGT
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FtPPDK-ref AGTCGATACGGGCATGAGCGCTGACGAAATCTACTCTAAAATCGAAAACCTGAGTGAAGT
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************************************************************
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pETEV-16b-ppdk TAATCCGATGCTGGGTTTCCGTGGCTGTCGCCTGGGTATTTCGTACCCGGAACTGACCGA
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FtPPDK-ref TAATCCGATGCTGGGTTTCCGTGGCTGTCGCCTGGGTATTTCGTACCCGGAACTGACCGA
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************************************************************
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pETEV-16b-ppdk AATGCAGGTTCGTGCCATCTTTCAAGCTGCGGTCAGCATGACCAACCAGGGTGTGACGGT
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FtPPDK-ref AATGCAGGTTCGTGCCATCTTTCAAGCTGCGGTCAGCATGACCAACCAGGGTGTGACGGT
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************************************************************
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pETEV-16b-ppdk TATTCCGGAAATCATGGTCCCGCTGGTTGGCACCCCGCAGGAACTGCGTCACCAAATTTC
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FtPPDK-ref TATTCCGGAAATCATGGTCCCGCTGGTTGGCACCCCGCAGGAACTGCGTCACCAAATTTC
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************************************************************
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pETEV-16b-ppdk TGTTATCCGCGGCGTCGCCGCAAATGTGTTTGCGGAAATGGGTGTCACCCTGGAATATAA
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FtPPDK-ref TGTTATCCGCGGCGTCGCCGCAAATGTGTTTGCGGAAATGGGTGTCACCCTGGAATATAA
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************************************************************
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pETEV-16b-ppdk AGTGGGCACGATGATTGAAATCCCGCGTGCTGCGCTGATTGCGGAAGAAATCGGTAAAGA
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FtPPDK-ref AGTGGGCACGATGATTGAAATCCCGCGTGCTGCGCTGATTGCGGAAGAAATCGGTAAAGA
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************************************************************
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pETEV-16b-ppdk AGCCGATTTCTTTAGCTTTGGCACCAACGACCTGACCCAGATGACGTTCGGTTATAGTCG
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FtPPDK-ref AGCCGATTTCTTTAGCTTTGGCACCAACGACCTGACCCAGATGACGTTCGGTTATAGTCG
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************************************************************
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pETEV-16b-ppdk CGATGACGTGGGCAAATTTCTGCAAATTTACCTGGCCCAGGGTATCCTGCAACATGATCC
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FtPPDK-ref CGATGACGTGGGCAAATTTCTGCAAATTTACCTGGCCCAGGGTATCCTGCAACATGATCC
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************************************************************
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pETEV-16b-ppdk GTTTGAAGTTATTGACCAGAAAGGCGTCGGTCAACTGATCAAAATGGCAACCGAAAAAGG
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FtPPDK-ref GTTTGAAGTTATTGACCAGAAAGGCGTCGGTCAACTGATCAAAATGGCAACCGAAAAAGG
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************************************************************
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pETEV-16b-ppdk CCGCGCCGCAAATCCGAGTCTGAAAGTGGGTATTTGCGGCGAACACGGCGGTGAACCGAG
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FtPPDK-ref CCGCGCCGCAAATCCGAGTCTGAAAGTGGGTATTTGCGGCGAACACGGCGGTGAACCGAG
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************************************************************
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pETEV-16b-ppdk TTCCGTGGCGTTTTTCGATGGCGTTGGTCTGGACTACGTTAGTTGTTCCCCGTTTCGTGT
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FtPPDK-ref TTCCGTGGCGTTTTTCGATGGCGTTGGTCTGGACTACGTTAGTTGTTCCCCGTTTCGTGT
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************************************************************
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pETEV-16b-ppdk CCCGATTGCCCGTCTGGCTGCCGCCCAAGTGATTGTTTAACTCGAGGATCCGGCTGCTAA
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FtPPDK-ref CCCGATTGCCCGTCTGGCTGCCGCCCAAGTGATTGTTTAACTCGAG--------------
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**********************************************
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pETEV-16b-ppdk CAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACC
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FtPPDK-ref ------------------------------------------------------------
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pETEV-16b-ppdk CCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTG
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FtPPDK-ref -------------------------------------
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149
misc/ma_as.score_ascii
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149
misc/ma_as.score_ascii
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@ -0,0 +1,149 @@
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T-COFFEE, Version_9.03.r1318 (2012-07-12 19:05:45 - Revision 1318 - Build 366)
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Cedric Notredame
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CPU TIME:0 sec.
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SCORE=99
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*
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BAD AVG GOOD
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*
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F. : 99
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F._1 : 99
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Zea : 99
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C. : 98
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cons : 99
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F. 1 976789999788889999999999999999999999999999999999 48
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F._1 1 976789999778889999999999999999999999999999999999 48
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Zea 1 976789999788889999999999999999999999999999999999 48
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C. 1 86-678999----78999999999999999999999999999999999 43
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cons 1 875689999677779999999999999999999999999999999999 48
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F. 49 999999999999999999999999999999999999999999999999 96
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F._1 49 999999999999999999999999999999999999999999999999 96
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Zea 49 999999999999999999999999999999999999999999999999 96
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C. 44 999999999999999999999999999999999999999999999999 91
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cons 49 999999999999999999999999999999999999999999999999 96
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F. 97 999999999999999999999999999999999-89999999999999 143
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F._1 97 999999999999999999999999999999999-89999999999999 143
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Zea 97 999999999999999999999999999999999-89999999999999 143
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C. 92 999999999999999999999999999999999379999999999999 139
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cons 97 999999999999999999999999999999999289999999999999 144
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F. 144 999999999999999999999999999999999999999999999999 191
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F._1 144 999999999999999999999999999999999999999999999999 191
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Zea 144 999999999999999999999999999999999999999999999999 191
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C. 140 999999999999999999999999999999999999999999999999 187
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cons 145 999999999999999999999999999999999999999999999999 192
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F. 192 998-89999999999999999999999999999999999999999999 238
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F._1 192 998-89999999999999999999999999999999999999999999 238
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Zea 192 998-89999999999999999999999999999999999999999999 238
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C. 188 998389999999999999999999999999999999999999999999 235
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cons 193 998289999999999999999999999999999999999999999999 240
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F. 239 999999999999999999999999999999999999999999999999 286
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F._1 239 999999999999999999999999999999999999999999999999 286
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Zea 239 999999999999999999999999999999999999999999999999 286
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C. 236 999999999999999999999999999999999999999999999999 283
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cons 241 999999999999999999999999999999999999999999999999 288
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F. 287 999999999999999999999999999999999999999999999999 334
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F._1 287 999999999999999999999999999999999999999999999999 334
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Zea 287 999999999999999999999999999999999999999999999999 334
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C. 284 999999999999999999999999999999999999999999999999 331
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cons 289 999999999999999999999999999999999999999999999999 336
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F. 335 999999999999999999999999999999999999999999999999 382
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F._1 335 999999999999999999999999999999999999999999999999 382
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Zea 335 999999999999999999999999999999999999999999999999 382
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C. 332 999999999999999999999999999999999999999999999999 379
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cons 337 999999999999999999999999999999999999999999999999 384
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F. 383 997777777-79999999999999999999999999999999999999 429
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F._1 383 997777777-79999999999999999999999999999999999999 429
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Zea 383 997777777-79999999999999999999999999999999999999 429
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C. 380 99-666666378999999999999999999999999999999999999 426
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cons 385 996677777278999999999999999999999999999999999999 432
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F. 430 999999999999999999999999999999999999999999999999 477
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F._1 430 999999999999999999999999999999999999999999999999 477
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Zea 430 999999999999999999999999999999999999999999999999 477
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C. 427 999999999999999999999999999999999999999999999999 474
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cons 433 999999999999999999999999999999999999999999999999 480
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F. 478 999999999999999999999999999999999999999999999999 525
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F._1 478 999999999999999999999999999999999999999999999999 525
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Zea 478 999999999999999999999999999999999999999999999999 525
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C. 475 999999999999999999999999999999999999999999999999 522
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cons 481 999999999999999999999999999999999999999999999999 528
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F. 526 999999999999999999999999999999999999999999999998 573
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F._1 526 999999999999999999999999999999999999999999999998 573
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Zea 526 999999999999999999999999999999999999999999999998 573
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C. 523 999999999999999999999999999999999999999999999987 570
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cons 529 999999999999999999999999999999999999999999999998 576
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F. 574 788999999999999999999999999999999999999999999999 621
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F._1 574 788999999999999999999999999999999999999999999999 621
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Zea 574 788999999999999999999999999999999999999999999999 621
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C. 571 -78889999999999999999999999999999999999999999999 617
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cons 577 688899999999999999999999999999999999999999999999 624
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F. 622 999999999999987766899999999999999999999999999999 669
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F._1 622 999999999999987766899999999999999999999999999999 669
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Zea 622 999999999999987766899999999999999999999999999999 669
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C. 618 9999999999998766--689999999999999999999999999999 663
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cons 625 999999999999977655799999999999999999999999999999 672
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F. 670 999999999999999999999999999887-89999999999999999 716
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F._1 670 999999999999999999999999999887-89999999999999999 716
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Zea 670 999999999999999999999999999887-89999999999999999 716
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C. 664 999999999999999999999999999876389999999999999999 711
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cons 673 999999999999999999999999999876289999999999999999 720
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F. 717 999999999999999999999999999999999999999999999999 764
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F._1 717 999999999999999999999999999999999999999999999999 764
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Zea 717 999999999999999999999999999999999999999999999999 764
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C. 712 999999999999999999999999999999999999999999999999 759
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cons 721 999999999999999999999999999999999999999999999999 768
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F. 765 999999999999999999999999999999999999999999999999 812
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F._1 765 999999999999999999999999999999999999999999999999 812
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Zea 765 999999999999999999999999999999999999999999999999 812
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C. 760 999999999999999999999999999999999999999999999999 807
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cons 769 999999999999999999999999999999999999999999999999 816
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F. 813 999999999999999999999999999999999999999999999999 860
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F._1 813 999999999999999999999999999999999999999999999999 860
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Zea 813 999999999999999999999999999999999999999999999999 860
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C. 808 999999999999999999999999999999999999999999999999 855
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cons 817 999999999999999999999999999999999999999999999999 864
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F. 861 999999999999999---8 876
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F._1 861 999999999999999---8 876
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Zea 861 999999999999999---8 876
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C. 856 9999999999999983747 874
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cons 865 9999999999999982228 883
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76
misc/ma_as_aln.fa
Normal file
76
misc/ma_as_aln.fa
Normal file
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@ -0,0 +1,76 @@
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>F. trinervia
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TAKKRVFTFGKGRSEGNRDMKSLLGGKGANLAEMSSIGLSVPPGLTISTE
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ACEEYQQNGKSLPPGLWDEISEGLDYVQKEMSASLGDPSKPLLLSVRSGA
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AISMPGMMDTVLNLGLNDEVVAGLAGKSG-ARFAYDSYRRFLDMFGNVVM
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GIPHSLFDEKLEQMKAEKGIHLDTDLTAADLKDLVEKYKNVYVEA-KGEK
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FPTDPKKQLELAVNAVFDSWDSPRANKYRSINQITGLKGTAVNIQSMVFG
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NMGNTSGTGVLFTRNPSTGEKKLYGEFLINAQGEDVVAGIRTPEDLGTME
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TCMPEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRTGKRTGKG
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AVRIAVDMVNEGLIDTRTAIKRVETQHLDQLLHPQFEDPSAYK-SHVVAT
|
||||
GLPASPGAAVGQVCFSAEDAETWHAQGKSAILVRTETSPEDVGGMHAAAG
|
||||
ILTARGGMTSHAAVVARGWGKCCVSGCADIRVNDDMKIFTIGDRVIKEGD
|
||||
WLSLNGTTGEVILGKQLLAPPAMSNDLEIFMSWADQARRLKVMANADTPN
|
||||
DALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKVALDL
|
||||
LLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEHIVNELAVDT
|
||||
GMSADEIYSKIENLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSM
|
||||
TN-QGVTVIPEIMVPLVGTPQELRHQISVIRGVAANVFAEMGVTLEYKVG
|
||||
TMIEIPRAALIAEEIGKEADFFSFGTNDLTQMTFGYSRDDVGKFLQIYLA
|
||||
QGILQHDPFEVIDQKGVGQLIKMATEKGRAANPSLKVGICGEHGGEPSSV
|
||||
AFFDGVGLDYVSCSPFRVPIARLAAAQVI---V
|
||||
>F. brownii
|
||||
TTKKRVFTFGKGNSEGNKDMKSLLGGKGANLAEMASIGLSVPPGLTISTE
|
||||
ACEEYQQNGKKLPPGLWDEILEGLQYVQKEMSASLGDPSKALLLSVRSGA
|
||||
AISMPGMMDTVLNLGLNDEVVDGLAAKSG-ARFAYDSYRRFLDMFGNVVM
|
||||
GIPHSLFDEKLEQMKAEKGIHLDTDLTAADLKDLAEQYKNVYVEA-KGEK
|
||||
FPTDPKKQLELAVNAVFDSWDSPRANKYRSINQITGLKGTAVNIQCMVFG
|
||||
NMGNTSGTGVLFTRNPSTGEKKLYGEFLVNAQGEDVVAGIRTPEDLVTME
|
||||
TCMPEAYRELVENCVILERHYKDMMDIEFTVQENRLWMLQCRTGKRTGKG
|
||||
AVRIAVDMVNEGLIDTRTAIKRVETQHLDQLLHPQFENPSAYK-SHVVAT
|
||||
GLPASPGAAVGQVVFSAEDAETWHAQGKSAILVRTETSPEDVGGMHAAAG
|
||||
ILTARGGMTSHAAVVARGWGKCCVSGCADIRVNDDMKVFTIGDRVIKEGD
|
||||
WLSLNGSTGEVILGKQLLAPPAMSNDLETFMSWADQARRLKVMANADTPN
|
||||
DALTARNNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDL
|
||||
LLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEHIVNELTADT
|
||||
GMSKDEIYSRIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSM
|
||||
NN-QGVTVIPEIMVPLVGTPQELRHQIGVIRGVAANVFAEMGLTLEYKVG
|
||||
TMIEIPRAALIADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYLS
|
||||
QGILQHDPFEVLDQKGVGQLIKMATEKGRAANPNLKVGICGEHGGEPSSV
|
||||
AFFDGVGLDYVSCSPFRVPIARLAAAQVV---V
|
||||
>Zea mays
|
||||
TTKKRVFHFGKGKSEGNKTMKELLGGKGANLAEMASIGLSVPPGFTVSTE
|
||||
ACQQYQDAGCALPAGLWAEIVDGLQWVEEYMGATLGDPQRPLLLSVRSGA
|
||||
AVSMPGMMDTVLNLGLNDEVAAGLAAKSG-ERFAYDSFRRFLDMFGNVVM
|
||||
DIPRSLFEEKLEHMKESKGLKNDTDLTASDLKELVGQYKEVYLSA-KGEP
|
||||
FPSDPKKQLELAVLAVFNSWESPRAKKYRSINQITGLRGTAVNVQCMVFG
|
||||
NMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVVAGIRTPEDLDAMK
|
||||
NLMPQAYDELVENCNILESHYKEMQDIEFTVQENRLWMLQCRTGKRTGKS
|
||||
AVKIAVDMVNEGLVEPRSAIKMVEPGHLDQLLHPQFENPSAYK-DQVIAT
|
||||
GLPASPGAAVGQVVFTAEDAEAWHSQGKAAILVRAETSPEDVGGMHAAVG
|
||||
ILTERGGMTSHAAVVARWWGKCCVSGCSGIRVNDAEKLVTIGSHVLREGE
|
||||
WLSLNGSTGEVILGKQPLSPPALSGDLGTFMAWVDDVRKLKVLANADTPD
|
||||
DALTARNNGAQGIGLCRTEHMFFASDERIKAVRQMIMAPTLELRQQALDR
|
||||
LLTYQRSDFEGIFRAMDGLPVTIRLLDHPSYEFLPEGNIEDIVSELCAET
|
||||
GANQEDALARIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFEAAIAM
|
||||
TN-QGVQVFPEIMVPLVGTPQELGHQVTLIRQVAEKVFANVGKTIGYKVG
|
||||
TMIEIPRAALVADEIAEQAEFFSFGTNDLTQMTFGYSRDDVGKFIPVHLA
|
||||
QGILQHDPFEVLDQRGVGELVKFATERGRKARPNLKVGICGEHGGEPSSV
|
||||
AFFAKAGLDFVSCSPFRVPIARLAAAQVL---V
|
||||
>C. symbiosum
|
||||
MA-KWVYKF----EEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTE
|
||||
ACTEYYNSGKQITQEIQDQIFEAITWLEELNGKKFGDTEDPLLVSVRSGA
|
||||
RASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRFIQMYSDVVM
|
||||
EVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEE
|
||||
FPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQTMVFG
|
||||
NKGETSGTGVAFTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLE
|
||||
NDMPDCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRNGKRTAPA
|
||||
ALQIACDLVDEGMITEEEAVVRIEAKSLDQLLHPTF-NPAALKAGEVIGS
|
||||
ALPASPGAAAGKVYFTADEAKAAHEKGERVILVRLETSPEDIEGMHAAEG
|
||||
ILTVRGGMTSHAAVVARGMGTCCVSGCGEIKINEEAKTFELGGHTFAEGD
|
||||
YISLDGSTGKIYKGDIETQEASVSGSFERIMVWADKFRTLKVRTNADTPE
|
||||
DTLNAVKLGAEGIGLCRTEHMFFEAD-RIMKIRKMILSDSVEAREEALNE
|
||||
LIPFQKGDFKAMYKALEGRPMTVRYLDPPLHEFVPHTEEE--QAELAKNM
|
||||
GLTLAEVKAKVDELHEFNPMMGHRGCRLAVTYPEIAKMQTRAVMEAAIEV
|
||||
KEETGIDIVPEIMIPLVGEKKELKFVKDVVVEVAEQVKKEKGSDMQYHIG
|
||||
TMIEIPRAALTADAIAEEAEFFSFGTNDLTQMTFGFSRDDAGKFLDSYYK
|
||||
AKIYESDPFARLDQTGVGQLVEMAVKKGRQTRPGLKCGICGEHGGDPSSV
|
||||
EFCHKVGLNYVSCSPFRVPIARLAAAQAALNNK
|
||||
80
misc/seq_ref_aln.fa
Normal file
80
misc/seq_ref_aln.fa
Normal file
|
|
@ -0,0 +1,80 @@
|
|||
>pETEV-16b-ppdk
|
||||
ATGGGCCATCATCATCATCATCATCATCATCATCACAGCAGCGGCCATGAAAACCTGTATTTTCAGGGAC
|
||||
ATATGACCGCTAAAAAACGCGTGTTTACGTTCGGCAAAGGTCGCTCGGAAGGCAACCGTGACATGAAATC
|
||||
GCTGCTGGGTGGCAAAGGTGCGAACCTGGCGGAAATGAGCTCTATTGGTCTGTCCGTGCCGCCGGGTCTG
|
||||
ACCATCTCAACGGAAGCCTGCGAAGAATATCAGCAAAATGGTAAATCGCTGCCGCCGGGCCTGTGGGATG
|
||||
AAATCAGCGAAGGTCTGGACTACGTTCAGAAAGAAATGTCAGCCTCGCTGGGCGATCCGTCGAAACCGCT
|
||||
GCTGCTGAGCGTCCGTTCTGGTGCGGCCATTAGCATGCCGGGCATGATGGATACCGTTCTGAACCTGGGT
|
||||
CTGAATGACGAAGTGGTTGCAGGTCTGGCCGGTAAATCGGGTGCTCGTTTCGCGTATGATAGCTACCGTC
|
||||
GCTTTCTGGACATGTTCGGTAACGTCGTGATGGGCATCCCGCATAGCCTGTTTGATGAAAAACTGGAACA
|
||||
GATGAAAGCCGAAAAAGGTATTCACCTGGATACCGACCTGACGGCAGCTGATCTGAAAGACCTGGTGGAA
|
||||
AAATATAAAAACGTTTACGTCGAAGCGAAAGGCGAAAAATTCCCGACCGATCCGAAAAAACAGCTGGAAC
|
||||
TGGCCGTCAATGCAGTGTTTGATAGTTGGGACTCCCCGCGTGCCAACAAATATCGCTCCATTAATCAGAT
|
||||
CACCGGTCTGAAAGGCACGGCAGTGAATATTCAATCTATGGTTTTCGGTAACATGGGCAATACCAGTGGC
|
||||
ACGGGTGTGCTGTTTACCCGTAACCCGAGCACGGGCGAGAAAAAACTGTACGGCGAATTCCTGATTAATG
|
||||
CCCAGGGTGAAGATGTTGTCGCAGGCATCCGCACCCCGGAAGATCTGGGTACCATGGAAACGTGCATGCC
|
||||
GGAAGCGTATAAAGAACTGGTGGAAAACTGTGAAATTCTGGAACGTCATTACAAAGATATGATGGACATC
|
||||
GAATTCACCGTTCAGGAAAATCGCCTGTGGATGCTGCAATGTCGTACCGGTAAACGCACGGGCAAAGGTG
|
||||
CTGTGCGTATTGCGGTTGATATGGTCAACGAAGGCCTGATTGACACCCGTACGGCAATCAAACGCGTTGA
|
||||
AACCCAGCATCTGGATCAACTGCTGCACCCGCAGTTCGAAGACCCGTCAGCGTATAAATCGCATGTGGTT
|
||||
GCCACCGGTCTGCCGGCATCCCCGGGTGCAGCAGTGGGCCAGGTTTGCTTTTCAGCTGAAGATGCGGAAA
|
||||
CGTGGCACGCTCAGGGTAAATCCGCGATCCTGGTGCGCACCGAAACGTCACCGGAAGATGTTGGCGGTAT
|
||||
GCATGCAGCTGCGGGCATTCTGACCGCACGTGGCGGTATGACGTCCCACGCAGCAGTCGTGGCTCGCGGC
|
||||
TGGGGTAAATGCTGTGTCTCAGGTTGTGCGGATATCCGTGTGAACGATGACATGAAAATCTTCACCATCG
|
||||
GTGATCGCGTGATCAAAGAAGGCGACTGGCTGAGCCTGAACGGTACCACGGGCGAAGTTATTCTGGGTAA
|
||||
ACAGCTGCTGGCACCGCCGGCAATGTCTAATGATCTGGAAATCTTTATGAGTTGGGCTGACCAGGCGCGT
|
||||
CGCCTGAAAGTGATGGCTAACGCGGATACCCCGAATGACGCCCTGACGGCACGTAACAATGGTGCACAGG
|
||||
GTATTGGTCTGTGCCGTACCGAACACATGTTTTTCGCTTCTGATGAACGTATTAAAGCGGTCCGCAAAAT
|
||||
GATCATGGCCGTGACGCCGGAACAGCGTAAAGTTGCTCTGGATCTGCTGCTGCCGTATCAACGTAGTGAC
|
||||
TTTGAAGGTATTTTCCGCGCAATGGATGGCCTGCCGGTGACCATCCGTCTGCTGGATCCGCCGCTGCATG
|
||||
AATTTCTGCCGGAAGGTGATCTGGAACACATTGTTAACGAACTGGCAGTCGATACGGGCATGAGCGCTGA
|
||||
CGAAATCTACTCTAAAATCGAAAACCTGAGTGAAGTTAATCCGATGCTGGGTTTCCGTGGCTGTCGCCTG
|
||||
GGTATTTCGTACCCGGAACTGACCGAAATGCAGGTTCGTGCCATCTTTCAAGCTGCGGTCAGCATGACCA
|
||||
ACCAGGGTGTGACGGTTATTCCGGAAATCATGGTCCCGCTGGTTGGCACCCCGCAGGAACTGCGTCACCA
|
||||
AATTTCTGTTATCCGCGGCGTCGCCGCAAATGTGTTTGCGGAAATGGGTGTCACCCTGGAATATAAAGTG
|
||||
GGCACGATGATTGAAATCCCGCGTGCTGCGCTGATTGCGGAAGAAATCGGTAAAGAAGCCGATTTCTTTA
|
||||
GCTTTGGCACCAACGACCTGACCCAGATGACGTTCGGTTATAGTCGCGATGACGTGGGCAAATTTCTGCA
|
||||
AATTTACCTGGCCCAGGGTATCCTGCAACATGATCCGTTTGAAGTTATTGACCAGAAAGGCGTCGGTCAA
|
||||
CTGATCAAAATGGCAACCGAAAAAGGCCGCGCCGCAAATCCGAGTCTGAAAGTGGGTATTTGCGGCGAAC
|
||||
ACGGCGGTGAACCGAGTTCCGTGGCGTTTTTCGATGGCGTTGGTCTGGACTACGTTAGTTGTTCCCCGTT
|
||||
TCGTGTCCCGATTGCCCGTCTGGCTGCCGCCCAAGTGATTGTTTAACTCGAGGATCC
|
||||
>FtPPDK-ref
|
||||
ATGGGCCATCATCATCATCATCATCATCATCATCACAGCAGCGGCCATGAAAACCTGTATTTTCAGGGAC
|
||||
ATATGACCGCTAAAAAACGCGTGTTTACGTTCGGCAAAGGTCGCTCGGAAGGCAACCGTGACATGAAATC
|
||||
GCTGCTGGGTGGCAAAGGTGCGAACCTGGCGGAAATGAGCTCTATTGGTCTGTCCGTGCCGCCGGGTCTG
|
||||
ACCATCTCAACGGAAGCCTGCGAAGAATATCAGCAAAATGGTAAATCGCTGCCGCCGGGCCTGTGGGATG
|
||||
AAATCAGCGAAGGTCTGGACTACGTTCAGAAAGAAATGTCAGCCTCGCTGGGCGATCCGTCGAAACCGCT
|
||||
GCTGCTGAGCGTCCGTTCTGGTGCGGCCATTAGCATGCCGGGCATGATGGATACCGTTCTGAACCTGGGT
|
||||
CTGAATGACGAAGTGGTTGCAGGTCTGGCCGGTAAATCGGGTGCTCGTTTCGCGTATGATAGCTACCGTC
|
||||
GCTTTCTGGACATGTTCGGTAACGTCGTGATGGGCATCCCGCATAGCCTGTTTGATGAAAAACTGGAACA
|
||||
GATGAAAGCCGAAAAAGGTATTCACCTGGATACCGACCTGACGGCAGCTGATCTGAAAGACCTGGTGGAA
|
||||
AAATATAAAAACGTTTACGTCGAAGCGAAAGGCGAAAAATTCCCGACCGATCCGAAAAAACAGCTGGAAC
|
||||
TGGCCGTCAATGCAGTGTTTGATAGTTGGGACTCCCCGCGTGCCAACAAATATCGCTCCATTAATCAGAT
|
||||
CACCGGTCTGAAAGGCACGGCAGTGAATATTCAATCTATGGTTTTCGGTAACATGGGCAATACCAGTGGC
|
||||
ACGGGTGTGCTGTTTACCCGTAACCCGAGCACGGGCGAGAAAAAACTGTACGGCGAATTCCTGATTAATG
|
||||
CCCAGGGTGAAGATGTTGTCGCAGGCATCCGCACCCCGGAAGATCTGGGTACCATGGAAACGTGCATGCC
|
||||
GGAAGCGTATAAAGAACTGGTGGAAAACTGTGAAATTCTGGAACGTCATTACAAAGATATGATGGACATC
|
||||
GAATTCACCGTTCAGGAAAATCGCCTGTGGATGCTGCAATGTCGTACCGGTAAACGCACGGGCAAAGGTG
|
||||
CTGTGCGTATTGCGGTTGATATGGTCAACGAAGGCCTGATTGACACCCGTACGGCAATCAAACGCGTTGA
|
||||
AACCCAGCATCTGGATCAACTGCTGCACCCGCAGTTCGAAGACCCGTCAGCGTATAAATCGCATGTGGTT
|
||||
GCCACCGGTCTGCCGGCATCCCCGGGTGCAGCAGTGGGCCAGGTTTGCTTTTCAGCTGAAGATGCGGAAA
|
||||
CGTGGCACGCTCAGGGTAAATCCGCGATCCTGGTGCGCACCGAAACGTCACCGGAAGATGTTGGCGGTAT
|
||||
GCATGCAGCTGCGGGCATTCTGACCGCACGTGGCGGTATGACGTCCCACGCAGCAGTCGTGGCTCGCGGC
|
||||
TGGGGTAAATGCTGTGTCTCAGGTTGTGCGGATATCCGTGTGAACGATGACATGAAAATCTTCACCATCG
|
||||
GTGATCGCGTGATCAAAGAAGGCGACTGGCTGAGCCTGAACGGTACCACGGGCGAAGTTATTCTGGGTAA
|
||||
ACAGCTGCTGGCACCGCCGGCAATGTCTAATGATCTGGAAATCTTTATGAGTTGGGCTGACCAGGCGCGT
|
||||
CGCCTGAAAGTGATGGCTAACGCGGATACCCCGAATGACGCCCTGACGGCACGTAACAATGGTGCACAGG
|
||||
GTATTGGTCTGTGCCGTACCGAACACATGTTTTTCGCTTCTGATGAACGTATTAAAGCGGTCCGCAAAAT
|
||||
GATCATGGCCGTGACGCCGGAACAGCGTAAAGTTGCTCTGGATCTGCTGCTGCCGTATCAACGTAGTGAC
|
||||
TTTGAAGGTATTTTCCGCGCAATGGATGGCCTGCCGGTGACCATCCGTCTGCTGGATCCGCCGCTGCATG
|
||||
AATTTCTGCCGGAAGGTGATCTGGAACACATTGTTAACGAACTGGCAGTCGATACGGGCATGAGCGCTGA
|
||||
CGAAATCTACTCTAAAATCGAAAACCTGAGTGAAGTTAATCCGATGCTGGGTTTCCGTGGCTGTCGCCTG
|
||||
GGTATTTCGTACCCGGAACTGACCGAAATGCAGGTTCGTGCCATCTTTCAAGCTGCGGTCAGCATGACCA
|
||||
ACCAGGGTGTGACGGTTATTCCGGAAATCATGGTCCCGCTGGTTGGCACCCCGCAGGAACTGCGTCACCA
|
||||
AATTTCTGTTATCCGCGGCGTCGCCGCAAATGTGTTTGCGGAAATGGGTGTCACCCTGGAATATAAAGTG
|
||||
GGCACGATGATTGAAATCCCGCGTGCTGCGCTGATTGCGGAAGAAATCGGTAAAGAAGCCGATTTCTTTA
|
||||
GCTTTGGCACCAACGACCTGACCCAGATGACGTTCGGTTATAGTCGCGATGACGTGGGCAAATTTCTGCA
|
||||
AATTTACCTGGCCCAGGGTATCCTGCAACATGATCCGTTTGAAGTTATTGACCAGAAAGGCGTCGGTCAA
|
||||
CTGATCAAAATGGCAACCGAAAAAGGCCGCGCCGCAAATCCGAGTCTGAAAGTGGGTATTTGCGGCGAAC
|
||||
ACGGCGGTGAACCGAGTTCCGTGGCGTTTTTCGATGGCGTTGGTCTGGACTACGTTAGTTGTTCCCCGTT
|
||||
TCGTGTCCCGATTGCCCGTCTGGCTGCCGCCCAAGTGATTGTTTAACTCGAGGATCC
|
||||
Loading…
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Add a link
Reference in a new issue